audy

bioinformatics-hacks

Scripts for miscelleneous bioinformatics tasks

catsay

:cat: :computer: like cowsay but cats

dotflies

~ bleep bloop

esrapgra

The opposite of argparse

ncbi-taxonomy-bot

Bot that toots when NCBI updates their taxonomy database

telegram-bot

:robot: :phone: it's a me! telegram bot!

deskclean

Keep your ~/Desktop tidy!

tree-of-life

:deciduous_tree: API for NCBI taxonomic lineages

C

I took this class and got a B

downloads

:floppy_disk: Happy file downloading for Python

klotzbot

IRC bot that logs

tiny-tax

A small lib for names/nodes.dmp

audy

audy

audy.github.io

my site / blog

bio-xl

Tools for dealing with large (> memory) collections of nucleotide sequences

learning-rust

ich lerne Rust

mashtree

:deciduous_tree: Create a tree using Mash distances

plottery

Procedurally Generated Pottery

python-twitter

A Python wrapper around the Twitter API.

rust-musl-builder

Docker images for compiling static Rust binaries using musl-libc and musl-gcc, with static versions of useful C libraries. Supports openssl and diesel crates.

sars-cov-2

SARS-CoV-2 variant calling and consensus assembly pipeline

scratch

:space_invader: I program my home computer

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

mag

Assembly and binning of metagenomes

nextflow-demo-barebones

Nextflow pipeline w/ modules sans nf-core

nextflow-hello-world

nf-core-demo

onecodex

Command line interface and Python client library for the One Codex API

pb-metagenomics-tools

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

snakemake-hello-world

Minimal working map-reduce pattern in Snakemake (with containerization)