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atotickov / AdmixPipe

Population structure and admixture analysis pipeline based on Snakemake

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AdmixPipe

Population structure and admixture analysis pipeline based on Snakemake

ToDo:

  • VCF -> PLINK
  • HyDe
  • Global ADMIXTURE
    • CV errors
      • Plot
    • Pong
  • Local ADMIXTURE
    • Pong
  • AdmixTools
    • PLINK -> Eigenstrat
    • D stats
    • F3 stats
    • F4 stats

About

Population structure and admixture analysis pipeline based on Snakemake

License:MIT License

Languages

Language:Python 100.0%