Evan McCartney-Melstad's repositories
ambystomaCapture
Analysis scripts and data relating to "Exon Capture Optimization in Large-Genome Amphibians"
ARC
Assembly by Reduced Complexity (ARC)
CTSprobes
Analysis scripts for "Exon Capture Optimization in Large-Genome Amphibians (Ambystoma spp.)"
GaryNewts
Data processing pipeline for Gary's newts on maven
herpSeqGrowth
Code for data aggregation and figure generation for our review in Annual Reviews of Animal Biosciences
ModernPhylogeny
Aggregate DNA data from NCBI, analyze, and publish online phylognies
NGSTools
NGSTools
pyrad
Assembly and analysis of RADseq data sets
RedPill
OS X screen saver of scrolling green A's, T's, C's, and G's
reptileAmphibianSeqGrowth
Code for data aggregation and figure generation for our review in Annual Reviews of Animal Biosciences
SNPs2alleles
Script for converting biallelic individual SNP genotype data into per-locus population-level allele count data for use with TreeMix
vcfToHaploytypeTrees
Starting with a phased (e.g. with beagle) VCF, parse into independent loci, build alignment files with reference, pull in ax/tig data, build trees, and visualize
velvetTarget
Optimize kmer choice for velvet in target enrichment experiments.