aspergatus / orbit-image-analysis

A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.

Orbit Image Analysis

A versatile image analysis software for biological image-based quantification.

News:

• 3.08: rendering speed improvements, bugfixes.

Available backends:

• Image provider local (local file system via Bioformats)
• Omero image server (image-provider-omero)

Scaleout via

• Spark scaleout (map-reduce-exec-spark)

Use gradle to build

Generic jar:

gradle jar
java -XX:MaxPermSize=150m -Djavax.xml.parsers.DocumentBuilderFactory=com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderFactoryImpl -cp "build/libs/orbit-image-analysis.jar;build/libs/lib/*" com.actelion.research.orbit.imageAnalysis.components.OrbitImageAnalysis

License: GPLv3

Website: http://www.orbit.bio