AM's repositories
robustSingleCell
Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.
SPAGEfinder
Computational approach to identify Survival associated Pairwise Gene Expression states.
hierarchicalSingleCell
An R package to robustly identify subpopulations in single-cell RNASeq data.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
martin_et_al_cell_2019
Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"
notebook_whisperer
An LLM-based coding assistant to help with the construction of Jupyter notebooks
MIT000
SC-UsersGroup
Info about NIH-IRP Single Cell Users Group events