asifzubair

cheatsheets

... lest we forget!

GIST

Guiding-Image Spatial Transcriptomics

information_retrieval

Information Retrieval and Web Search Engines

BayesianModelSelection

Bayesian model selection for the Drosophila gap gene network

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

coalescent

Gene Genealogies, Variation and Evolution - Readings

Community_Software_Tools_for_NGS

comp_methods_optimization

Computational Methods for Optimization

deconR

R package for Bayesian deconvolution of bulk RNAseq data

genbioconductor

Materials for Genomics Data Science: Introduction to Bioconductor

GIST-paper

Code to generate manuscript figures

github-markdown-toc

Easy TOC creation for GitHub README.md

gitignore

A collection of useful .gitignore templates

gsoc

Numfocus Google Summer of Code Materials

helios

Solr client for nodejs

livecoded-api-server

API rest server in Python 3, as livecoded in Powerful Python video

manhattanly

manhattanly edited to pass snp as custom data

Math502a

Programming assignments from USC Numerical Analysis class

mlxtend

A library of extension and helper modules for Python's data analysis and machine learning libraries.

nmf

Cross Validated NMF

PC-CHiP

Pan-cancer quantitative histopathology analysis using deep learning

php-sample

PHP sample for OnePageCRM API v3

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

pytorch-NMF

A pytorch package for non-negative matrix factorization.

REPCLASS

This tool facilitates transposable elements consensus classification

Rscripts

contents of my ~/.Rscripts folder, minus private ones with account numbers. I'll probably package these.

snakemake-scrnaseq

Snakemake pipeline for scRNAseq analysis

splatter

Simple simulation of single-cell RNA sequencing data

TIDAL

Transposon Insertion and Depletion AnaLyzer

USCthesis

LaTeX template in accordance with the University of Southern California Theses and Dissertations Formatting Guidelines.