asherkhb / plotly-demo

Genomics with Plot.ly demonstration materials

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Plotly Demo

This repository contains the instructional slides, data, and code from the September 13th, 2016 Tucson AZ Python Meetup & September 28th, 2016 Tucson Data Science Meetup Plotly demos.

Created by Asher Baltzell (@asherkhb) and Blake Joyce (@bjoyce3).


Description of contents...

  • README.md
    • This documentation.
  • 2016-09-13_python-presentation.pdf
    • Python Meetup instructional presentation giving overview of genetics & getting started tips for Plot.ly & Python.
  • 2016-09-28_datascience-presentation.pdf
    • Data Science Meetup instructional presentation giving overview of genetics & getting started tips for Plot.ly in Python & R.
  • example0.py
    • Example code from 2016-09-13_python-presentation.pdf.
  • plotly-demo.ipynb
    • IPython Jupyter notebook from the 2016-09-13 Python Tucson meetup containing getting started instructions & two case examples focused on genomics data.
  • plotly-help-demo.ipynb
    • IPython Jupyter notebook containing information on getting more help with Plotly & docstring query examples.
  • datasci-demo.ipynb
    • IPython Jupyter notebook containing demo from 2016-09-28 Data Science Tucscon meetup.
  • mutation-data.txt
    • Data for plotly-demo.ipynb Example #1: Synonymous Mutation's Plot ("Ks Plot")
  • fractbias-data.csv
    • Data for plotly-demo.ipynb Example #2: Fractionation Bias Plot.
  • requirements.txt
    • PIP freeze of all packages used in the demonstrations.
    • Please note that these examples all use Python 2.7.11

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Genomics with Plot.ly demonstration materials


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