aselewa's repositories
dropseqRunner
Lightweight pipeline for processing droplet-based single-cell RNA-seq data
cancerWGS_pipeline
A Snakemake pipeline for calling SSMs and CNVs from matched normal-tumor WGS data
better-qqplots
python code for creating high quality qq-plots
dropseq_pipeline
A Snakemake pipeline for processing Drop-seq reads into an expression matrix
annotateVCF
Annotates samples in VCF file using ExAC
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
clustability
Cluster stability analysis using SC3 stability metric
dropRunner_BasuLab
special version of dropRunner for Basu Lab on RCC at UChicago
finemappeR
https://aselewa.github.io/finemappeR/
finemap-cancer
website for repo
graph_assembler
Python implementation of a DeBruijin graph.
heart_atlas
heart atlas analysis in R
heartBigWig
UCSC tracks for scATAC-seq
intronGTF
a simple script to generate intronic annotations in GTF format
journal-club
Short summaries of articles & discussions by UCHG Computational Biology Group
mixed-species
Pipeline for processing mixed-species 10x data
tcga-germline
TCGA germline project
torus
QTL Discovery using Annotations
ultimate-product-ds
The Ultimate Product Data Science & Analytics Resource
web
Alan's webpage https://aselewa.github.io/web/
website
Alan's website https://aselewa.github.io/website/