Arun Seetharam's repositories
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
ClusterMonitor
Very simple script which logs the CPU and RAM usage of the submitted job.
data-science-ipython-notebooks
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
learn-advanced-python
Learn advanced python techniques using self contained jupyter notebooks
run_scripts
some of my run scripts for getting jobs done!
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
3d-dna
3D de novo assembly (3D DNA) pipeline
aseetharam
profile
aseetharam.github.io
My personal webpage
awk_data_manipulation
using AWK to do some routine data manipulation
bagels
open source bagel recipe; let's raise the quality of bagels worldwide :bagel: :rocket:
git-demo
a simple git repository
intro_python
Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
Maize_WGS_Build
Code and Data to include in WGS Build
modern-unix
A collection of modern/faster/saner alternatives to common unix commands.
my-new-repo
my new repo
PANDAS-TUTORIAL
Jupyter Notebooks and Data Sets for Pandas Library
PhylDiag
docker container
r_docker
Docker container for genomics analyses in R.
r_phylogenetics_worshop
Using ggtree to build phylogenetic trees
RIA
Ancestry
scinet-site
The SCINet website for the USDA-ARS
SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
transcript-assemblers
transcritp assembly programs in one container