aschampion

diluvian

Flood filling networks for segmenting electron microscopy of neural tissue

rust-n5

Rust implementation of the N5 "Not HDF5" tensor file system format

h2n5

HTTP 2 N5: Serve N5 datasets over HTTP as tiled image stacks

schemer

A database schema migration library with DAG dependencies

n5-wasm

WASM bindings to the Rust implementation of N5

n5gest

CLI utilities for N5 files

bitbar-janelia-lsf

BitBar plugin to display the status of jobs on the Janelia LSF cluster

2020hemibrain_examples

Code examples for Schlegel, Bates et al. (2020)

bitwarden-ssh-auto-login

Auto ssh login with bitwarden saved password & totp pin

bmm-2017-zebrafish

CATMAID

Collaborative Annotation Toolkit for Massive Amounts of Image Data

chezmoi-dotfiles

Dotfiles for use with chezmoi

cookiecutter-cruft-poetry-tox-pre-commit-ci-cd

A Modern DevSecOps-centric Cookiecutter template for Python packages and/or projects

dask

Parallel computing with task scheduling

gh-actions

Common reusable workflows

homebrew-misc

personal homebrew tap

homesick-dotfiles

Dotfiles for use with homesick

IO

iocage-plugin-calibre-web

Artifact files for calibre-web iocage plugin

napari-simple-3d-animation

navis

Python 3 library for Neuron Analysis and Visualization

nblast-rs

rstar

R*-tree library for the rust ecosystem

scripts

slack-latexbot

A LaTeX bot made for a personal Slack group.

solvers

Wrapper classes for Gurobi, CPLEX, and SCIP ILP and IQP solvers

spark-lmb

Scripts for using Spark on LMB's HPC

ttc

zarrita

zfp

Compressed numerical arrays that support high-speed random access