Asan Emirsaleh's repositories
Atria
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
BamQC
Mapped QC analysis program
BIN
Blurry Video Frame Interpolation (CVPR20)
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
Cp-hap
Estimate the ratio of different directions of single copy in the chloroplast genome
DeepSimulator
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
Jellyfish
A fast multi-threaded k-mer counter
LightGraphsExtras.jl
Additional functionality for LightGraphs.jl
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
photo-locating
Locate your photos using embedded exif metadata
plastome-preprocessing
Plastome Data Preprocessing Framework for reliable comparative genomics.
plotsr
Tool to plot synteny and structural rearrangements between genomes
rnaquast
Quality assessment of de novo transcriptome assemblies from RNA-Seq data
rosalind-club
Bioinformatics Rosalind Problems solved by members of the Rosalind Club at Skoltech. 2022
SangTK
SangTK is an ML-backed toolkit that improves the quality of Sanger base calls.
scripts-on-Genomics
Scripts for some simple jobs in Bioinformatics.
sleuth
Differential analysis of RNA-Seq
SOAPdenovo-Trans
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
tabbed_txt_rows_filter
Script to filter rows in tabbed txt files such as logfiles or sequencing summary, by another tabbed txt
transabyss
de novo assembly of RNA-seq data using ABySS
vcf-annotator
Add biological annotations to variants in a given VCF file.
xmatchview
đź—» Visualization of genome/gene sequence synteny
Zotero2MD
A Python library to retrieve annotations and notes from Zotero and save them into Markdown files.