asalt's repositories
bcmproteomics
A python package that allows easy access to data from the BCM Proteomics database.
ComplexHeatmap
Make Complex Heatmaps
just-proteomics
just various routines for managing and processing proteomics data
mokapot-analyses
The code for reproducing the results from "mokapot: Fast and flexible semi-supervised learning for peptide detection"
MSPCRunnerDAG
DAGster pipeline for proteomics
RomicsProcessor
R package that provides a structured R object to store and analyze omics data
BLCAsubtyping
Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA
FragPipe
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
llm
Access large language models from the command-line
say
say things with spd-say
site-annotate
rollup psms to site level