Beast code in Giters

Andrei Salomatov's repositories

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Machine learning approach to identifying de novo mutations (SNP and INDEL) in familial cohorts.

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Dockerfile to build a Docker image for PacBio SMR-Link

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Randomly generate a numeric ID between 10000 and 99999 while checking it has not been used.

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all kinds of stuff

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ML related utilities and exploration

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Search genetic sequences for recurring motifs

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Tools for options analysis.

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pedigree file representation

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validated, scalable, minimalist variant detection pipeline

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Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

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A Variant Call Format reader for Python.

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Remap a bam file to a given reference, and call variants with a choice of GATK HaplotypeCaller, Freebayes, Platypus.

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utility functions for various projects

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