Syed Asad Rahman (asad)

asad

Geek Repo

Company:EMBL-EBI

Location:Cambridge, UK

Home Page:https://uk.linkedin.com/in/asadrahman

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Syed Asad Rahman's repositories

ReactionDecoder

Reaction Decoder Tool (RDT) - Atom Atom Mapping Tool

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SMSD

SMSD is a Java based software library for finding Maximum Common Subgraph (MCS)/ Substructure between small molecules.

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CDKHashFingerPrint

Improvised CDK Hashed fingerprint

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aaconservation

A library for calculating Amino Acid conservation in sequence alignment

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alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

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bert

TensorFlow code and pre-trained models for BERT

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Deep_learning_examples

Examples of using deep learning in Bioinformatics

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deeplearning-biology

A list of deep learning implementations in biology

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deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

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diamond

Accelerated BLAST compatible local sequence aligner.

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find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.

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gae

Implementation of Graph Auto-Encoders in TensorFlow

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gcn

Implementation of Graph Convolutional Networks in TensorFlow

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Graph_convolutional_NN_molecule_maker

A Graph Neural Network (Geometric machine learning) for molecular generation

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kekulescope

Code for KekuleScope

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keras

Deep Learning for humans

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macOS-eGPU

Make your Mac compatible with NVIDIA and AMD eGPUs. (macOS High Sierra)

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mhfp

Molecular MHFP fingerprints for cheminformatics applications

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MolGAN

Tensorflow implementation of MolGAN: An implicit generative model for small molecular graphs (https://arxiv.org/abs/1805.11973)

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morph-net

Fast & Simple Resource-Constrained Learning of Deep Network Structure

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Mortality_prediction

Code connected to the paper "Predicting the probability of death using proteomics"

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mykrobe

Antibiotic resistance prediction in minutes

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ncov

Nextstrain build for novel coronavirus (nCoV)

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plass

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

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plass-analysis

Benchmark for PLASS paper

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primer3-py

Simple oligo analysis and primer design

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Protein_Sequence_Classification

A case study on Pfam dataset to classify protein families.

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Stock-Prediction-Models

Gathers machine learning and deep learning models for Stock forecasting including trading bots and simulations

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tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

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