Syed Asad Rahman's repositories
ReactionDecoder
Reaction Decoder Tool (RDT) - Atom Atom Mapping Tool
CDKHashFingerPrint
Improvised CDK Hashed fingerprint
aaconservation
A library for calculating Amino Acid conservation in sequence alignment
alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
Deep_learning_examples
Examples of using deep learning in Bioinformatics
deeplearning-biology
A list of deep learning implementations in biology
deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
diamond
Accelerated BLAST compatible local sequence aligner.
find_differential_primers
Code for design of diagnostic PCR primers, and metabarcoding markers.
gae
Implementation of Graph Auto-Encoders in TensorFlow
Graph_convolutional_NN_molecule_maker
A Graph Neural Network (Geometric machine learning) for molecular generation
kekulescope
Code for KekuleScope
keras
Deep Learning for humans
macOS-eGPU
Make your Mac compatible with NVIDIA and AMD eGPUs. (macOS High Sierra)
morph-net
Fast & Simple Resource-Constrained Learning of Deep Network Structure
Mortality_prediction
Code connected to the paper "Predicting the probability of death using proteomics"
plass-analysis
Benchmark for PLASS paper
primer3-py
Simple oligo analysis and primer design
Protein_Sequence_Classification
A case study on Pfam dataset to classify protein families.
Stock-Prediction-Models
Gathers machine learning and deep learning models for Stock forecasting including trading bots and simulations