A script to count total sequences and number of sequences with average Q >=30 of a fastq file (can be gzipped).
python q30.py <fastq_file_name> <output_file_name><file_name>
total sequences: X
q30 reads: Y
A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)
A script to count total sequences and number of sequences with average Q >=30 of a fastq file (can be gzipped).
python q30.py <fastq_file_name> <output_file_name><file_name>
total sequences: X
q30 reads: Y
A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)
MIT License