polecat
Phylogenetic Overview & Local Epidemiological Cluster Analysis Tool
polecat is a tool developed with 'real-time' genomics in mind.
Using a background phylogeny, such as the large phylogeny available through the COG-UK infrastructure on CLIMB, polecat will identify and flag clusters based on various configurable statistics.
A fully customisable report is generated, summarising information about the clusters of interest.
polecat documentation
Full documentation can be found at https://artic-network.github.io/polecat/
Play around with the example report here
Quick Links:
- Polecat clusters
- Install and update polecat
- Usage
- Example report
- Statistics options
- Background data
- Contributors & acknowledgements
polecat was created by the Rambaut Group, Edinburgh University
