arthursw / bioimageit_core

Core python library for BioImageIT

BioImageIT core

BioImageIT core is a python library to write biological data analysis pipelines.

Documentation

The documentation is available here.

Development

Run tests

Test are written with unittest python package. All tests are located in the subpackage bioimagepy/tests. Run tests with the command:

cd bioimageit_core
pipenv run python -m unittest discover -v

Build the documentation

The documentation is written with Sphinx. To build is run the commands:

cd docs
pipenv run sphinx-build -b html ./source ./build

Generate the requirements.txt

The requirements.txt file is generated from Pipenv with:

pipenv lock --requirements > requirements.txt