Beast code in Giters

Aaron Quinlan's repositories

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A probabilistic framework for sensitive structural variant discovery

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C library for high-throughput sequencing data formats

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A Variant Call Format reader for Python.

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a simple C++ library for parsing and manipulating VCF files

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BWK awk modified for biological data

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Modified or extracted from other programs

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header awk: awk with _named_ variables

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Collection of hacks and demos showing capability of HTML5 apps

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Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.

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Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

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python access to UCSC genomes database

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A comprehensive SV discovery suite.

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A Python interface to the BEDTools API using Cython

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API and toolkit for reading, writing, and manipulating BAM (genome alignment) files

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