arq5x / grabix

a wee tool for random access into BGZF files.

arq5x/grabix Issues

incorrect output
Updated 2 years ago11
Need to a account for headers (e.g., VCF)
Updated 2 years ago1
GEMINI ISSUE
Updated 3 years ago
grabix size returns negative on large file
Updated 4 years ago1
What would it take to enable S3 support
Updated 5 years ago
Won't Compile !!!
Closed 6 years ago6
Know line number from .gbi?
Closed 7 years ago1
Won
Closed 7 years ago
Silent failure on FASTQ files with empty sequence entries (i.e. empty lines)
Closed 7 years ago7
Need BAM support. Can index BAMs in the same way.
Updated 7 years ago1
grabix hangs on non-bgzipped file
Closed 8 years ago6
allow bgzipping while indexing
Updated 8 years ago
grabix on file with only header is wrong
Updated 8 years ago
Grabix hangs when vcfs are not sorted
Closed 9 years ago1
Unclear license of grabix.cpp
Closed 9 years ago2
grabix grab some.vcf.gz 0 returns the 1st row of the file, but should throw an error
Updated 9 years ago
Possible off-by-1 error at chunksize boundary
Closed 9 years ago3
grabix.cpp:258:58: error: 'getpid' was not declared in this scope
Closed 9 years ago1
Tag a releasee
Updated 10 years ago
patch to avoid uninitialised values, correcting cast int->uint64 for long files
Updated 11 years ago1
Makefile gaining flexibility to allow for platform-specific hardening
Updated 11 years ago
Seed of a man page
Updated 11 years ago
Speed up grab
Updated 11 years ago
Expose to Python with Cython interface
Updated 12 years ago