arp95

DeepLIIF

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

app_deep_learning

T81-558: PyTorch - Applications of Deep Neural Networks @Washington University in St. Louis

RNA-seq-analysis

RNAseq analysis notes from Ming Tang

Race-specific-prognostic-models-for-EC

Computational Image and Molecular Analysis Reveals Unique Prognostic Features of Immune Architecture in African Versus European American Women with Endometrial Cancer

contrastive-unpaired-translation

Contrastive unpaired image-to-image translation, faster and lighter training than cyclegan (ECCV 2020, in PyTorch)

SRGAN-PyTorch

A simple and complete implementation of super-resolution paper.

QuickAnnotator

An open-source digital pathology based rapid image annotation tool

From-0-to-Research-Scientist-resources-guide

Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.

BCI

BCI: Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix

pytorch-CycleGAN-and-pix2pix

Image-to-Image Translation in PyTorch

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

HistoQC

HistoQC is an open-source quality control tool for digital pathology slides

triq

TRIQ implementation

the-gan-zoo

A list of all named GANs!

2016_Bray_NatureProtocols

Supporting data files, documentation, and updated tips for the Cell Painting protocol

imbalanced-dataset-sampler

A (PyTorch) imbalanced dataset sampler for oversampling low frequent classes and undersampling high frequent ones.

SGDNet

ACM MM 2019 SGDNet: An End-to-End Saliency-Guided Deep Neural Network for No-Reference Image Quality Assessment

cytominer

Methods for Image-Based Cell Profiling

cleverhans

An adversarial example library for constructing attacks, building defenses, and benchmarking both

pytorch-lightning

Pretrain, finetune and deploy AI models on multiple GPUs, TPUs with zero code changes.

DeepLabV3Plus-Pytorch

Pretrained DeepLabv3 and DeepLabv3+ for Pascal VOC & Cityscapes

cityscapesScripts

README and scripts for the Cityscapes Dataset

vision

Datasets, Transforms and Models specific to Computer Vision

ARMA-Networks

DigiPathoImageAnalysis

List of academic institutes/companies working on computer-based digital pathology image analysis

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

awesome-machine-learning-startups-berlin

🤖 A curated list of machine learning & artificial intelligence startups in Berlin (Germany)

Python

All Algorithms implemented in Python

MONAI

AI Toolkit for Healthcare Imaging

deep-learning-v2-pytorch

Projects and exercises for the latest Deep Learning ND program https://www.udacity.com/course/deep-learning-nanodegree--nd101