arontommi

RNAseq-VAX

A Nextflow pipeline for allele variant expression

VCFlat

flatten Variant Call Format(VCF)

AOC2021

autocomplete

Fig adds autocomplete to your terminal.

cbioportal-frontend

React Frontend of cBioPortal :tada:

cyvcf2

cython + htslib == fast VCF and BCF processing

demultiplex

FindSV

Structural variant pipeline

flair

Full-Length Alternative Isoform analysis of RNA

IgCaller

Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from whole-genome sequencing in lymphoid neoplasms.

juncBASE

Junction Based Analysis of Splicing Events for RNA-Seq

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nanoseq

UNDER CONSTRUCTION: Nanopore demultiplexing, QC and alignment pipeline

nf-mixcr

NGSCheckMate

Software program for checking sample matching for NGS data

NirvanaParse

rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

SarekCLLPostProcess

Process StrelkaBP results from Sarek

SarGet

Test repository for NextFlow Haloplex analysis pipeline

smallerbams

SVDB

structural variant database software

svimmer

Structural variant merging tool

UMI2Header

vimium

The hacker's browser.