arontier-egkim / osra

Optical Structure Recognition Application

daverona/osra

This is a repository for Docker images of OSRA (Optical Structure Recognition Application).

• GitLab source respository: https://gitlab.com/daverona/docker/osra
• Docker Hub repository: https://hub.docker.com/r/daverona/osra

Available versions are:

• 2.1.0-1, latest

Installation

Pull the image from Docker Hub repository:

docker image pull daverona/osra

Quick Start

To see the help:

docker container run --rm \
  daverona/osra

Usage

Assume you want to read /path/to/input/sample.png to produce an SMI file /path/to/output/sample.smi.

To achieve this:

docker container run \
  --rm \
  --volume /path/to/input:/input \
  --volume /path/to/output:/output \
  daverona/osra \
  osra \
    --write /output/sample.smi \
    /input/sample.png 

References

• OSRA: https://sourceforge.net/projects/osra/
• OSRA Online: https://cactus.nci.nih.gov/cgi-bin/osra/index.cgi