arogozhnikov

einops

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

python3_with_pleasure

A short guide on features of Python 3 with examples

3d_nn

Raymarching neural network in browsers with WebGL shaders

infiniteboost

InfiniteBoost: building infinite ensembles with gradient descent

hep_ml

Machine Learning for High Energy Physics.

arogozhnikov.github.io

'Brilliantly wrong' blog, Machine Learning visualizations live here

eindex

Multidimensional indexing for tensors

readable_capsnet

Blazingly fast capsule networks in 75 lines of pytorch+einops

demuxalot

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

rtg_score

Rank-To-Group score evaluates contribution of confounding factors

adamw_bfloat16

AdamW optimizer for bfloat16 models in pytorch 🔥.

DeepMMD-GAN

Yet another (very simple) approach for adversarial training.

iview5d

Extremely simplistic viewer of small ndimensional patches for jupyter notebook. Powered by einops

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

tcr-matching

Learning T-cell immunity *without* knowing peptides

arogozhnikov

cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

cupy

NumPy & SciPy for GPU

demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

incubator-mxnet

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

kronecker-attention-pytorch

Implementation of Kronecker Attention in Pytorch

microANARCI

Minified version of ANARCI

mint

Multi-modal Content Creation Model Training Infrastructure including the FACT model (AI Choreographer) implementation.

mlp-mixer-pytorch

An All-MLP solution for Vision, from Google AI

numpy

Numpy main repository

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

sloths

when pandas is too much hassle

streamlit-aggrid

Implementation of Ag-Grid component for Streamlit

tooltool

Personal tools used in various places