arnaudbore

scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

AndysBrainBook

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

aodf-toolkit

Python toolkit for estimating asymmetric ODFs by filtering a symmetric ODF image

combine_flows

connectoflow

containers-scilus

Files needed to build a container to run all scilus flows (except dmriqc_flow)

Dcm2Bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

disconets_flow

dmriqc_flow

A Nextflow pipeline for diffusion MRI quality check

dmriqcpy

Diffusion MRI Quality Check in python

dwi_ml

Code for people working on machine learning for diffusion MRI

franksim-website

freesurfer_flow

lab-documentation

SIMEXP-Documentation

mercure-dcm2bids

Module to run dcm2bids conversion in mercure.

microbrain

Fully automated whole-brain diffusion MRI analysis of grey matter

neurogister

nf-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-scil

SCIL Nextflow Toolbox

rbx_flow

register_flow

registration_flow

Nextflow pipeline to register Nifti and Trk in a common space

scil_data

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

tractoflow_documentation

Documentation related files for tractoflow

tractometry_flow

trimeshpy

Triangular Mesh Processing in Python

unf-montreal.ca

utilities

website

Code and files for the main nf-core website.