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Arley Camargo's repositories

PCAtest

R package PCAtest for evaluating the statistical significance of PCA analysis, selecting number of significant PC axes, and testing the contributions of the variables to those PCs.

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The package areaPD contains functions for calculating phylogenetic diversity (PD) for a set of geographic areas, calculating complementarity PD given a selected area, and drawing a Venn's diagram of PD within and between areas, given a phylogenetic tree and an assignment of samples (e.g., alleles, species, etc.) to areas.

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P2C2M2

R package to test the multi-species coalescent model using trees estimated with starBEAST2 and to estimate false-positive error rates based on samples from the posterior predictive distributions

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