Beast code in Giters

Adam Rivers's starred repositories

awesome-ml4co

Awesome machine learning for combinatorial optimization papers.

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documentation-theme-jekyll

A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.

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disentangled_vae

Replicating "Understanding disentangling in β-VAE"

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cnaps

Code for: "Fast and Flexible Multi-Task Classification Using Conditional Neural Adaptive Processes" and "TaskNorm: Rethinking Batch Normalization for Meta-Learning"

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sketch

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

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cleanBib

Probabilistically assign gender and race proportions of first/last authors pairs in bibliography entries

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FAMSA

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

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BOCS

Bayesian Optimization of Combinatorial Structures

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bo_pr

Bayesian Optimization over Discrete and Mixed Spaces via Probabilistic Reparameterization

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dashing2

Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.

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MALDIquant

Quantitative Analysis of Mass Spectrometry Data

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lshensemble

LSH index for approximate set containment search

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ffbf

Feed-forward Bloom filters

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shinyBN

shinyBN: An online application for interactive Bayesian network inference and visualization

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CbAS

Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'

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selbal

selbal: selection of balances for microbial signatures

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ALDEx_bioc

ALDEx_bioc is the working directory for updating bioconductor

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nsf-coa

Generate NSF Collaborators and Other Affiliations Information from your publications

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Bandit-BO

Bayesian Optimization for Categorical and Continuous Inputs

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PLSDAbatch_workflow

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tomatula

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GPy-ABCD

A basic implementation with GPy of an Automatic Bayesian Covariance Discovery (ABCD) system

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DIHM

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aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

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csl-to-markdown

Makes your Zotero's/Mendeley's bibliography export compatible with markdown

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Pytorch-UNet-2

UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images

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coda.base

A Basic Set of Functions for Compositional Data Analysis

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GuideMaker

GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

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coda.count

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mixpack

mixpack: a package for mixture components analysis

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