Aristotle's repositories
dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
spateo-release
Spatiotemporal modeling of spatial transcriptomics
dynamo-tutorials
Tutorials on using latest dynamo package
dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
spateo-viewer
Web application demonstrating 3D modeling of spatial transcriptomics
dynamo-notebooks
Tutorials of Dynamo usage cases and code to reproduce the manuscript
spateo-tutorials
tutorials for spateo package
stereo-seq-with-dynamo
notebooks that use dynamo to analyze the Stereo-seq datasets
biocircuits
Utilities for Caltech course BE 150
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dynamo_readthedocs
deposit tutorials for dynamo readthedocs pages
dynamo_submission
notebooks for generating figures for submitting dynamo
PISA
A collection of tools to process single-cell omics datasets.
public-apis
A collective list of free APIs for use in software and web development.
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
python-project-blueprint
Blueprint/Boilerplate For Python Projects
qiu_lab_website
The source code for the Qiu lab website (based on ato-neulab)
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
streamlines
Streamlines calculator