argriffing's repositories

eigensoft

principal components population genetics analysis on linux

iterutils

python itertools recipes

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arbtkf91

arbitrary precision tkf91 alignment

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scipy

Scipy main repository

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arb

C library for arbitrary-precision floating-point ball arithmetic

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asv

Airspeed Velocity: A simple Python benchmarking tool with web-based reporting

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ctmcaas

continuous time markov chains as a service

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cvxpy

A Python-embedded modeling language for convex optimization problems.

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dipy

Diffusion MR Imaging in Python

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em-dec-2013

maximum likelihood estimation for a model with missing data

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ete

ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of any type of hierarchical trees. This includes phylogenetic trees, clustering results and profile-based trees. It supports node annotation, programatic tree drawing, circular visualization, SVG, PNG and PDF image rendering, and more!

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flint2

FLINT (Fast Library for Number Theory)

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jsonctmctree

Computes conditional summaries of continuous-time Markov processes on trees.

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LinearOperators.jl

Linear Operators for Julia

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mapalign

Diffusion map based embedding and alignment

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matplotlib

matplotlib: plotting with Python

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MatrixDepot.jl

A Test Matrix Collection for Julia

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networkx

Official NetworkX source code repository.

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nhml3-unofficial

for polishing the interface of Galtier's computational molecular evolution package nhml3

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numpy

Numpy main repository

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pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

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phyly

Phylogenetic CTMC functions in Arb

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pyoperators

Operators and solvers for high-performance computing.

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pypseudospectra

check something related to abstract linear operators

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repro-galtier-2004

How did they get these results? That's a difficult question because it's impossible to know.

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scikit-learn

scikit-learn: machine learning in Python

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statsmodels

Statsmodels: statistical modeling and econometrics in Python

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yasb

yet another scipy benchmark

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