arfesta

Sniffles

Structural variation caller using third generation sequencing

bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

isONclust

De novo clustering of long transcript reads into genes

Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

poreover

Nanopore basecalling and consensus decoding

Flye

De novo assembler for single molecule sequencing reads using repeat graphs

ra

This repository is deprecated, please use the link to the right.

Basecalling-comparison

A comparison of different Oxford Nanopore basecallers

nicethings

A collection of functions for writing nice inline R code in Rmarkdown.

Deepbinner

a signal-level demultiplexer for Oxford Nanopore reads

beautiful-jekyll

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

git-flight-rules

Flight rules for git

Filtlong

quality filtering tool for long reads

xatlas

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

minion_qc

Quality control for MinION sequencing data