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aquaskyline / Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

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BAM:the genome region you specified has no read cover

shiying-sxu opened this issue · comments

commented

<_io.TextIOWrapper name='' mode='w' encoding='utf-8'> No read has been process, either the genome region you specified has no read cover, or please check the correctness of your BAM input (../testingData/chr21/chr21.bam).

how can i sove this problem?
thankyou!

commented

please switch to using Clair or Clair3.

commented

please switch to using Clair or Clair3.
This happened when an error was reported when running the PrepDataBeforeDemo.sh command. How do I switch?