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aquaskyline / Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

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Does the pacBio model you have trained can be used for PacBio CCS reads?

ydLiu-HIT opened this issue · comments

commented

Hi,
I want to detect SNP and Indels on PacBio CCS read BAM (ftp://ftp.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/HG002_NA24385_son/PacBio_SequelII_CCS_11kb/HG002.SequelII.pbmm2.hs37d5.whatshap.haplotag.RTG.10x.trio.bam), is there any model you have trained can be used for calling, or I have the need to train a new model for PacBio CCS reads.

Best

commented

Resolved in Clair.