April Shen's repositories
accession-commons
Generic library for accessioning any type of object
applied-cats
Problems from applied category theory textbook (Fong & Spivak)
bioconda-recipes
Conda recipes for the bioconda channel.
biohackathon-projects-2023
Project code for BioHackathon Europe 2023.
contig-alias
Service to provide synonyms of chromosome/contig identifiers
contig-name-converter
Convert between contig name convention of the same assembly
covid19dp-submission
Covid-19 data portal submissions
eva-accession
EVA non-human variant accessioning service
eva-assembly-ingestion
Automation for ingesting a new assembly for a species
eva-common-pyutils
EBI EVA - Common Python Utilities
eva-ebi-search-export
Scripts to export EVA data and metadata to EBI search
eva-opentargets
Workflow to map ClinVar trait names to ontology terms and prepare this information for submission to OpenTargets
eva-pipeline
Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch
eva-sub-cli
EVA Submission Command Line Interface for Validation
eva-submission
Components that connect and automate main tasks in the EVA workflow
eva-submission-ws
Web services for EVA Submissions
eva-tasks
Code used to to perform tasks or one of analysis.
eva-tools
Tools compatible with the infrastructure of the European Variation Archive pipeline
eva-training
Training materials for the European Variation Archive
eva-vcf-merge
Tool for merging large sets of VCF files
eva-web
Web front-end for the European Variation Archive
eva-ws
European Variation Archive REST web services API
gray-scott-bot
A bot that tweets out gifs of Gray-Scott simulations.
MARS
Multi-Repository Data Submission using ISA-JSON
opentargets-pharmgkb
Pipeline to provide evidence strings for Open Targets from PharmGKB
variant-remapping
The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.
vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11
web-prototype
Prototypes for new website components in React