apregier

svviz

Read visualizer for structural variants

bioconda-recipes

Conda recipes for the bioconda channel.

competitive-pwm-scorer

cramtools

Format specification and java implementation for next-gen data.

docker-alignment_helper-cwl

ExData_Plotting1

Plotting Assignment 1 for Exploratory Data Analysis

genome

GetData

Course project for Getting and Cleaning Data

graph_genotyper

Experiment with scala and vg protobuf messages

miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

one-offs

Pipeline-Standardization

RepData_PeerAssessment1

Peer Assessment 1 for Reproducible Research

rocker

R configurations for Docker

rvtests

Rare variant test software for next generation sequencing data

seqwish

alignment to variation graph inducer

sv-pipeline

Pipeline for structural variation detection in cohorts

svtools

Tools for processing and analyzing structural variants.

svtyper

Bayesian genotyper for structural variants

TestTracker

TheHumanPangenome

Creation and Toolsets for a Long-Read Trio Based Human Pangenome

UR

Rich Transactional Objects for Perl

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vg

tools for working with variation graphs

wugc-hudson

Washington University Genome Center Hudson testing suite and deploy scripts

yaps2

Yet Another Pipeline System 2 (YAPS2)