This repository contains several perl plugin modules for the Ensembl Variant Effect Predictor (VEP). Please refer to the documentation at the top of each file for details of what each plugin does and how to run it, though for most you will just need to put the module in your ~/.vep/Plugins directory (or elsewhere on your $PERL5LIB) and then run the VEP with the argument --plugin <module name>. More documentation on VEP plugins, and on the VEP itself, can be found on the Ensembl website: http://www.ensembl.org/info/docs/tools/vep/script/index.html Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2018] EMBL-European Bioinformatics Institute Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. http://www.ensembl.org/info/about/code_licence.html