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AOML 'Omics (aomlomics)

AOML 'Omics

aomlomics

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Official GitHub organization of the AOML 'Omics program. AOML is a federal research laboratory of the National Oceanic and Atmospheric Administration (NOAA).

Location:Miami, FL

Home Page:https://www.aoml.noaa.gov

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AOML 'Omics's repositories

tourmaline

Amplicon sequence processing workflow using QIIME 2 and Snakemake

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mitohelper

Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies

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tutorials

Tutorials for data science and bioinformatics

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labelmaker

Printable QR labels for samples

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omics-data-management

Previous guide to omics data management, including NOAA Omics Data Management Plan.

License:GPL-3.0Stargazers:7Issues:1Issues:6

edna2obis

Code to convert eDNA metabarcoding data to Darwin Core for OBIS

Language:Jupyter NotebookLicense:MITStargazers:4Issues:1Issues:8

aomlomics.github.io

Official GitHub organization of the AOML Omics program. AOML is a federal research laboratory of the National Oceanic and Atmospheric Administration (NOAA).

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amethyst

Metagenomics analysis workflow

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cloud-classroom

Guides for using commercial cloud resources

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datasets

List of datasets generated by the AOML 'Omics program

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erie

Study of cyanobacterial harmful algal blooms in Lake Erie using autonomous sampling and DNA sequencing

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sedtrap

Files associated with the USGS GoM Sediment Trap (GMT cruises)

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roboboogie

Protocols and labware specifications for the KingFisher Flex and Opentrons OT-2 robots

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gomecc

Input files and data analysis for NOAA GOMECC-4 DNA project.

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protocols

Protocols used by AOML Omics labs, following the BeBOP-OBON standard

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sase

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sterivex

Methods development for high-throughput eDNA sampling and extraction with Sterivex filters

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study-template

Create a new repository for each study using this template.

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