Beast code in Giters

aolsh's starred repositories

Phen2Gene

Phenotype driven gene prioritization for HPO

Language:PythonMIT4100

wq

📱🌐📋 wq: a modular framework supporting web / native apps for mobile surveys and geospatial data collection. Powered by Django REST Framework, Redux, React, and Material UI.

Language:JavaScriptMIT25800

vcfnp

Load numpy arrays and HDF5 files from VCF (variant call format)

Language:PythonMIT3100

vcf_parser

Simple vcf parser, based on PyVCF

Language:PythonMIT4300

peddy

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

Language:Jupyter NotebookMIT100

vcftoolbox

Small helpers for working with vcf files

Language:PythonMIT100

gene_lists

List of gene lists for genomic analyses.

Language:Python21600

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

Language:PythonNOASSERTION12200

jet-bridge

Jet Admin – No-code Business App builder

Language:PythonMIT162000

shopify_python_api

ShopifyAPI library allows Python developers to programmatically access the admin section of stores

Language:PythonMIT121700

SlickGrid

A lightning fast JavaScript grid/spreadsheet

Language:JavaScriptMIT681300

django-genomix

Core library for Nexus django projects. Common utils needed across many apps

Language:PythonMIT300

opal-observations

Observations plugin for Opal

Language:PythonNOASSERTION500

opal-lab

Lab tests plugin for Opal

Language:PythonNOASSERTION300

EHR-Phenolyzer

A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list

Language:Python3500

InterVar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

Language:Python18500

doc-ANNOVAR

Documentation for the ANNOVAR software

21900

nalaf

NLP framework in python for entity recognition and relationship extraction

Language:PythonApache-2.011200

SNAP2

SNP effect predictor

Language:PerlNOASSERTION600

panoptes

Eyes on your (genomic) data

Language:JavaScriptNOASSERTION3600

opal-modelli-ng-tool

An experimental clinician-facing modelling tool UI wrapper for GitHub repositories, in Angular

Language:JavaScriptMIT200

ReadBrowser

A very simple clinical system and associated read code browser with intelligent search

200

a very early, unelaborated idea about a Markdown-like specification for quickly writing free text medical notes that can be programmatically parsed into structured data, with terminologies where appropriate

Language:Python1900

opal

A web framework for building highly usable healthcare applications.

Language:JavaScriptNOASSERTION27500

scikit-allel

A Python package for exploring and analysing genetic variation data

Language:Jupyter NotebookMIT28300

deepTools

Tools to process and analyze deep sequencing data.

Language:PythonNOASSERTION66400

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

Language:PythonMIT23400

web2py

Free and open source full-stack enterprise framework for agile development of secure database-driven web-based applications, written and programmable in Python.

Language:PythonNOASSERTION210000

anchorman

Anchorman turns your text into hypertext.

Language:PythonNOASSERTION700

lektor-website

The main lektor website.

Language:HTMLNOASSERTION100