anykine

omim

2015-11-12-ucla

HPC and Big Data Analytics using Comet - SDSC’s latest Computing Resource through XSEDE

anykine.github.io

asdpex

badgene

problematic, polymorphic genes

DuchenneConnect2016

Analysis of Duchenne Registry data

rnaseq_tools

generate RNA-seq scripts on SGE cluster

bioc-refcard

Bioconductor cheat sheet

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

cellphonedb

emma

exonViz

visualize exon usage d3

gatk4-germline-snps-indels

Workflows for germline short variant discovery with GATK4

hgvs

HGVS variant name parsing and generation

leafcutter

LeafCutter: Annotation-free quantification of RNA splicing. Yang I Li, David A Knowles, Jonathan K Pritchard.

machine_learning_examples

A collection of machine learning examples and tutorials.

MendelianRNA-seq

myhadoop

Framework for deploying Hadoop clusters on traditional HPC from userland

nf-regtools

PubMed

PubMed analysis: code and data

pylmm

A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

radiationHybrid

reactinterface

Project for Building an Interface with React Course on Lynda.com

rnaseq_pipeline_example

sdsc-summer-institute-2015

SKAT_NGS-2015

ucsc_dmd_hub

Udemy-notes

My udemy notebooks

vim-as-an-ide

Workshop on how to use Vim Plugins.