Anup Kumar's repositories
ml-jupyter-notebook
GPU-enabled docker container with Jupyterlab for artificial intelligence
galaxy_tool_recommendation_transformers
Galaxy tool recommendation using transformers
alpaca-lora
Instruct-tune LLaMA on consumer hardware
DNABERT_2
The official implementation of DNABERT-2.
galaxy-hub
Galaxy Community Hub
Galaxy-ML
Make machine learning simpler with Galaxy
galaxytools
:microscope::books: Galaxy Tool wrappers
GeenuFF
Schema and API for a relational db that encodes gene models in an explicit, structured, and robust fashion.
gNetDGP
An End-to-End Graph Neural Network for Disease Gene Prioritization.
Helixer
Using Deep Learning to predict gene annotations
infrastructure-playbook
Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
large_files_repository
Large files on GitHub
mistral-haystack
Mistral + Haystack: build RAG pipelines that rock 🤘
mlflow
Open source platform for the machine learning lifecycle
NIAPU
NIAPU: network-informed adaptive positive-unlabelled learning for disease genes identification
Predict-PTM-site-fine-tuning
Prediction of dephosphorylation sites using fine-tuned protein large models and integrate it as a Galaxy tool
ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
self-instruct
Aligning pretrained language models with instruction data generated by themselves.
training-material
A collection of Galaxy-related training material