Anuj Guruacharya, PhD's repositories
AbLang
AbLang: A language model for antibodies
amazon-sagemaker-examples
Example 📓 Jupyter notebooks that demonstrate how to build, train, and deploy machine learning models using 🧠 Amazon SageMaker.
Cancer-Subtype-Classification
Correlational clustering approach to finding biomarkers of cancer which can be used for genotyping in later studies using simpler technologies such as microarrays.
clinical-trial-analytics
A dashboard for clinical trial analytics
coalescent_basic
A basic coalescent process simulation. Biology, a coalescent process simulates an evolutionary process with different forces. Mathematically, a coalescent process is a backward time Markov Chain.
diffab
✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
dlab-public
Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
fisher-wright
A simulation for the Fisher-Wright model in evolutionary biology
git-collaboration
A repository to demonstrate collaboration workflows
git-novice
Software Carpentry introduction to Git for novices.
hodgkin-huxley
a web-based simulation of the Hodgkin-Huxley models in neuroscience
IMGTHLA
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
libmolgrid
Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows
pycox
Survival analysis with PyTorch
python-novice-gapminder
Introduction to Python for non-programmers using gapminder data
python-novice-inflammation
I forked this to develop lesson plans for python learners
QuantBioClass
A set of tutorials I made for an undergrad statistics I am teaching
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
R_Tutorials_For_Undergrads
I have developed a set of 9 tutorials for a Quantitative Biology class at University of Oklahoma