antonkulaga

cromwell-client

Client for the Cromwell workflow engine

bigdata-docker

hdfs, hue, spark-notebook docker-compose

biocontainers

Docker containers of Computational Biology of Aging Group

genotations

A small library to work with ensembl and other annotations in python

pycomfort

Utility methods for python code

bioworkflows

Shared bioinformatic workflows

yspecies

Code from "Machine learning analysis of longevity-associated gene expression landscapes in mammals" paper.

antibody-mm

repository to learn a bit of MM

assembly

library to ease cloning and gene synthesis

awesome-polars

A curated list of Polars talks, tools, examples & articles. Contributions welcome !

biochatter-server

Flask server for BioChatter integration into web apps

crewai_genie

deeptrio-nextflow

detectIS

A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data

dna-seq

DNA-Seq pipeline

expressions-dashboard

Expression dashboard to visualize

fastapi-cache

fastapi-cache is a tool to cache fastapi response and function result, with backends support redis and memcached.

filters

gero-drugs-module

Code for gero-grugs module

gluformer

The official implementation of the paper "Gluformer: Transformer-Based Personalized Glucose Forecasting with Uncertainty Quantification."

libsais_wrapper

Python wrapper for Libsais a library for constructing suffix arrays, longest common prefix arrays, and the Burrows-Wheeler transform of a given input string

longevity_gpts

restful backends for GPTs

mice_dfi

mitochondria

models-exploration

repository to play with different models

non-animal-models

The code to experiment with non-animal models extraction

oakvar

Genomic variant analysis platform

pywhy-llm

Experimental library integrating LLM capabilities to support causal analyses

rna-seq

bioinformatics pipelines

spark-extensions

Varios extensions for Spark