antonkratz

deiva_github

DEIVA prototype, implemented in Shiny

genome-research-edgeR-DESeq2

Generate edgeR- and DESeq2-flavored input files for DEIVA

alignOntology

Code for aligning two ontologies. Originally used in "A gene ontology inferred from molecular networks" doi:10.1038/nbt.2463

CliXO-1.0

CliXO algorithm re-implemented

DCell

DCell browser and gene deletion simulator

ddot

Toolkit for constructing, analyzing, and visualizing data-driven ontologies

dotfiles

various configuration files including .gitconfig, .vimrc and .screenrc

DrugCell

A visible neural network model for drug response prediction

HiSig

Enrichment analysis for nested and overlapping gene sets

hiview

HiView of DNA Damage Response Assemblies Map (DDRAM)

LDL

Learning Deep Learning

microbiome-metabolome-curated-data

AK fork of Muller, E., Algavi, Y.M. & Borenstein, E. The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis. npj Biofilms Microbiomes 8, 79 (2022). https://doi.org/10.1038/s41522-022-00345-5

nest_drugcell_sdp

shap

A game theoretic approach to explain the output of any machine learning model.