Building is very straightforward, you will need LaTeX and Git. The following command will create a local copy of the source code for you.
git clone https://github.com/anton-petrunin/graph-theory.git
Go to the created folder and pdflatex:
cd graph-theory/
pdflatex graph-theory.tex
makeindex graph-theory
biber graph-theory
pdflatex graph-theory.tex
To get arXiv.tar with all needed files do
tar -cvf arXiv.tar --files-from list-of-files.txt
The following command produces PDF version 1.3 from eps-file
epstopdf --gsopt=-dCompatibilityLevel=1.3 foo.eps