plantiSMASH web interface
This is the web interface powering http://plantismash.secondarymetabolites.org/
Installation
pip install -r requirements.txt
Running the Web Interface
First, create a settings.cfg file:
############# Configuration #############
DEBUG = False
SECRET_KEY = "Better put a proper secret here"
# Path to antiSMASH output directory on disk
RESULTS_PATH = '/data/plantismash/upload'
# URL path to antiSMASH results in the webapp
RESULTS_URL = '/upload'
# Flask-Mail settings
DEFAULT_RECIPIENTS = ["alice@example.com", "bob@example.com"]
# Redis settings
REDIS_URL = 'redis://your.redis.database:port/number'
# defaults to redis://localhost:6379/0
# Flask-Downloader settings
# This should be the same as RESULTS_PATH
DEFAULT_DOWNLOAD_DIR = '/data/plantismash/upload'
# Content NCBI likes to return when reading from NCBI fails.
BAD_CONTENT = ('Error reading from remote server', 'Bad gateway', 'Cannot process ID list', 'server is temporarily unable to service your request', 'Service unavailable', 'Server Error')
#########################################
Then export the path to the settings file as WEBSMASH_CONFIG environment
variable and use a WSGI runner of your choice to run the app (I'm using uwsgi
in this example).
export WEBSMASH_CONFIG=/var/www/settings.cfg
uwsgi --pythonpath /var/www --http :5000 --module websmash:app --uid 33 --gid 33 --touch-reload /tmp/reload_websmash --daemonize /var/log/uwsgi.log
Now you can connect to the antiSMASH web app at port 5000. Now set up a reverse proxy to serve the web app from port 80.
License
Just like antiSMASH, the web interface is available under the GNU AGPL version 3.
See the LICENSE.txt file for details.