antagomir

scripts

Miscellaneous utility and development scripts

netresponse

Functional network analysis

antagomir.github.io

Homepage

bib

BibTex bibliography files

thesis

Source materials for theses and selected study assignments

ANCOMBC

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

antagomir

Leo Lahti / antagomir

bioc-project

Introduction to the Bioconductor project

biocblog

A Distill Blog for Bioconductor community

CONCOCT

Clustering cONtigs with COverage and ComposiTion

CRC-data-analysis-

DMT

Dependency Modeling Toolkit

pint

Probabilistic dependency analysis for mRNA and aCGH data

eurostat

Plotting Eurostat statistics on income and living conditions

greendeal

Louhos

Louhos utilities

mia_r3

Microbiome analysis

miaSim

microbiome data simulation package

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

pics-public

Misc Images

Tools-Microbiome-Analysis

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis