annelle-abatoni / Microbiome.jl

For analysis of microbiome and microbial community data

Latest Release

Development Status

Description

Microbiome.jl is a package for manipulating and analyzing microbiome and microbial community data.

Installation

Install Microbiome from the Julia REPL:

julia> using Pkg

julia> pkg"add Microbiome"

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

julia> pkg"add Microbiome#master"

Companion Packages

• You might also be interested in some functionality provided by BiobakeryUtils.jl.
• Microbiome.jl uses EcoBase under the hood for many of its types and methods.
• Microbiome.jl has a Tables.jl interface, so you can convert CommunityProfiles to any Tables.jl-compatible sink.
  • CommunityProfile is not yet a sink itself