andschar

aws.s3

Amazon Simple Storage Service (S3) API Client

keyring

:closed_lock_with_key: Access the system credential store from R

alphafold3-pytorch

Implementation of Alphafold 3 in Pytorch

MolPipeline

clms-api-docs

miniforge

A conda-forge distribution.

PaCMAP

PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

REcoTox

REcoTox is a semi-automated, interactive R workflow to process US EPA ECOTOX Knowledgebase entire database ASCII files

actions

GitHub Actions for the R community

TRIDENT

A collection of transformer-based models and developmental scripts presented in the publication "Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms".

CompTox-ToxRefDB

US EPA's Toxicity Reference Database (ToxRefDB)

OpenMS

The codebase of the OpenMS project

openfoodtox

OpenFoodTox as an R package

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

patRoon

Workflow solutions for mass-spectrometry based non-target analysis.

crystal

🔮 Graphile's Crystal Monorepo; home to Grafast, PostGraphile, pg-introspection, pg-sql2 and much more!

quarto-web

Quarto website

linux

Linux kernel source tree

geosphere

R geosphere package

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

rotl

Interface to Open Tree of Life API

biobricks

BioBricks makes loading data from biological datasets and databases easy. Python and R interfaces, data version control, and an API for pulling datasets that have been converted to easy-to-use formats.

mkdocs

Project documentation with Markdown.

ambit-docker

Run the AMBIT services on Docker

quarto-cli

Open-source scientific and technical publishing system built on Pandoc.

beemixtox_public

For the manuscript Bee mixtox

global-chemical-inventory-database

The global chemical inventory database

cleanventory

A Package to Clean-up Chemical Inventory Data

catalogue-browser

Source code of the catalogue browser java application.

mol2vec

Mol2vec - an unsupervised machine learning approach to learn vector representations of molecular substructures