andreyto

mr-mpi-som

Parallel implementation of Self-Organizing Map (SOM) algorithm with MapReduce-MPI

mgtaxa

A free software for taxonomic classification of metagenomic sequences with machine learning techniques

mr-mpi-blast

Parallel implementation of NCBI BLAST+ with MapReduce-MPI

andreyto.github.com

GitHub User Web page

YAP

Development of the JCVI fork of YAP 16S pipeline continued here

aconr

anrepr

Analysis Reporting in R as a Hierarchical Graphical Logging

arcasHLA-quant

Fork of roseorenbuch/arcasHLA-quant for making bug fixes

at-fork-cctools

This is a fork of The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

atac-seq-pipeline

Fork of ENCODE ATAC-seq WDL pipeline for making patches

BugBuilder

Hands-free microbial genome assembly

conda-recipes

Fork of main conda recipes repository for submitting patches

doRedis

R/foreach Redis backend for parallel computing

galaxy

Fork of main Galaxy repo for making patches

galaxy_r_api_workshop

Tutorial for accessing Galaxy bioinformatics workbench API from R using parsec CLI and providing dependencies for the R-based Galaxy tools as Docker containers

GeneSelector

Fork of Bioconductor GeneSelector repository for patching

homebrew

:beer: The missing package manager for OS X.

mgsat

MGSAT semi-automated differential abundance analysis of omics datasets

mgsat-examples

Example reports generated by MGSAT

micgent

Old location of MICGENT repository

pgp-par

PGP: Parallel Proteogenomics Pipeline for MPI clusters, high-throughput batch clusters and multicore workstations

proddl-c

Client-cloud self-scaling computational backend and user API for MS Azure

proddl2

Protein Docking with Discriminative Learning v.2

pVACtools

Fork of pVACtools for bug fixes

rsv_epi_2017_suppl

Supplemental code and reference data for RSV epidemiology analysis

rthreejs

Fork of rthreejs for making patches

srst2

Fork of SRST2 repository for making changes

stabs

Fork of stabs repository for bug fixing

VICVB

Genome browsing with JBrowse for JCVI VIGOR output inside Galaxy