andrewsu

Andrew Su's repositories

biomedical-graph-visualizer

Biomedical Graph Visualizer (BGV)

Language:Python1 10

abcb-git-test

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academictree

Language:Jupyter NotebookGPL-3.004 2

Benchmarks

Language:Jupyter NotebookMIT000

biolink-model

Schema and generated objects for biolink data model and upper ontology

Language:PythonCC0-1.0010

mentorship-survey-analysis

Language:PythonMIT02 8

biothings_explorer

TRAPI service for BioThings Explorer

Language:JavaScriptApache-2.0000

BTE_metakg_viz

Language:Jupyter Notebook000

cellxgene

An interactive explorer for single-cell transcriptomics data

Language:JavaScriptMIT010

chp_metadata

YAML OpenAPI metadata for the NCATS Connections Hypothesis Provider (CHP)

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DrugMechDB

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

Language:Jupyter NotebookMIT010

frink-data-lake-analysis

Language:PythonApache-2.0000

lab-website-template-docs

GitBook documentation for Lab Website Template

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langchain-test

Language:PythonApache-2.0000

minihackathons

Language:Jupyter NotebookMIT010

ontogpt

LLM-based ontological extraction tools, including SPIRES

BSD-3-Clause000

openai_topic_classification

Language:Jupyter Notebook000

recount3

Explore and download data from the recount3 project

Language:R000

Relay

Autonomous relay system for NCATS Biomedical Data Translator

Language:PythonMIT010

repoDB

Language:Python000

rstudio_test

test integration with RStudio

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RTX

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

Language:PythonMIT010

ScriptShare

A repository for some simple tools that we want to share.

MIT000

su_openai_dev

Language:Python000

TACT

For voting on two-month release cycle items

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test_pages

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TISSUES

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TranslatorArchitecture

MIT010

usrse.github.io

US RSE umbrella web page

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wdsub

Wikidata Subsetting

Language:HTMLMIT010