Giters
Su Lab (SuLab)

Su Lab

SuLab

Geek Repo

Code repos for the Su Lab at The Scripps Research Institute

Location:The Scripps Research Institute

Home Page:http://sulab.org/

Github PK Tool:Github PK Tool

Su Lab's repositories

WikidataIntegrator

A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

Language:PythonLicense:MITStargazers:242Issues:19Issues:134

DrugMechDB

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

Language:Jupyter NotebookLicense:CC0-1.0Stargazers:53Issues:11Issues:213

Applied-Bioinformatics

Student course material for the Applied Bioinformatics course at Scripps Research

Language:Jupyter NotebookStargazers:35Issues:18Issues:17

mark2cure

Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.

Language:PythonStargazers:14Issues:5Issues:223

sparql_to_pandas

Example for accessing SPARQL endpoints in Python with Pandas

Language:Jupyter NotebookStargazers:13Issues:7Issues:2

scheduled-bots

GeneWiki Scheduled Bots

Language:Jupyter NotebookLicense:MITStargazers:9Issues:10Issues:49

genewikiworld

Generate a network of all items we care about, and some we don't....

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:6Issues:5Issues:4

GeneWikiCentral

GeneWiki Organization

Language:JavaScriptLicense:MITStargazers:5Issues:13Issues:141

MechRepoNet

Language:Jupyter NotebookStargazers:5Issues:3Issues:0

TSRI-CBB

This is the Github repository for The Scripps Research Institute Computational Biology and Bioinformatics (CBB) community and affiliated core track for graduate students.

Language:HTMLStargazers:4Issues:8Issues:1

bioshovel

Biological text mining tool.

Language:PythonStargazers:3Issues:5Issues:0

Wikidata-phenomizer

Incorporate wikidata statements into phenomizer

Language:Jupyter NotebookLicense:MITStargazers:3Issues:3Issues:0

garbanzo

Wikidata Semantic Query API

Language:PythonStargazers:2Issues:3Issues:8

Krusty

neo4j <-> wikibase import/export tool

Language:PythonStargazers:1Issues:10Issues:12

biogps_core

Language:JavaScriptLicense:GPL-3.0Stargazers:0Issues:3Issues:59

biogps_dataset

BioGPS.org dataset & dataset loading code repository

Language:CSSStargazers:0Issues:3Issues:18

CBRonMRN

Language:PythonStargazers:0Issues:2Issues:0

data-science-resources

A list of some of our favorite data science resources

License:Apache-2.0Stargazers:0Issues:9Issues:1

dataset-repository-selector

A tool to help biologists make their datasets more findable, accessible, and schema.org-compliant

Language:RLicense:Apache-2.0Stargazers:0Issues:5Issues:0

DMDB_Analysis

Language:Jupyter NotebookStargazers:0Issues:3Issues:0

DrugMechDB-1

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

Language:Jupyter NotebookLicense:MITStargazers:0Issues:1Issues:0

KnowledgeGraphEmbedding

Language:Jupyter NotebookLicense:MITStargazers:0Issues:1Issues:0

Lit2Hybrid

Language:VueStargazers:0Issues:5Issues:13

mercator_shiny

A web application for visualization, exploration, and analysis of public bulk RNA-seq data.

Language:RStargazers:0Issues:5Issues:0

MRN_AD

Use MechRepoNet to examine possible treatments for Alzheimer's Disease

Language:Jupyter NotebookStargazers:0Issues:5Issues:0

niaid-data-portal

NIAID Dataset Portal

Language:PythonLicense:MITStargazers:0Issues:6Issues:0

path_plots

A simple repo to quickly plot paths in a newtorkx graph

Language:PythonStargazers:0Issues:1Issues:0

sulab.org

Language:HTMLLicense:BSD-3-ClauseStargazers:0Issues:13Issues:0

wikidata-translate

Language:PythonStargazers:0Issues:5Issues:0

Wikidata_Biomedical-Subgraph

This is a follow-up effort from work done within Waagmeester et al 2020 eLife and Mayers et al 2022 Bioinformatics

Language:Jupyter NotebookLicense:CC0-1.0Stargazers:0Issues:4Issues:3