ABC-Finder i.e., A Docker-based package for the identification of ABC proteins in all organisms, and downstream analysis and visualization of the topology of ABC proteins using an interactive web browser. ABC-Finder is built and deployed in a Linux container, making it scalable for many concurrent users on our servers and also enabling users to download and run ABC-Finder locally. Overall, ABC-Finder is an extremely convenient, portable and platform-independent package for the identification and subsequent domain prediction of ABC proteins.
Fig : Generalized workflow and implementation of ABC-Finder.
Fig : ABC-Finder Result.
This program is released as open source software under the terms of GNU GPLv3.
You can install ABC-finder-webserver directly from the source code or build and run it from within Docker container.
Clone this repository:
$ git clone https://github.com/lynngroup/abcfinder.git
Move into the repository directory:
$ cd abcfinder
The file Dockerfile & docker-compose.yaml contains instructions for building a Docker container for ABC-finder-webserver.
If you have Docker & docker-compose installed on your computer you can build the container like so: Once Docker is set up on the host computer, ABC-finder can be downloaded and installed using the following command:
docker pull lynngroup/abcfinderThis will fetch the latest version with 'latest' tag.
To run ABC-finder use the following command:
docker-compose build
docker-compose up -d This will initiate ABC-finder at port 8000 of local server or localhost. The user may use another port to initiate another instance. [To manipulate Docker utilities refer to Docker Documentation] While theABC-finder instance is running inside Docker container,ABC-finder User Interface (UI) can be accessed through a web browser at following URL:
- http://localhost:8000/ or
- http://IP_ADDRESS_OF_HOST_COMPUTER:8000
ABC-finder can now be used to upload your data using the browser.
Please submit bug reports and feature requests to the issue tracker on GitHub: